Hi Ghasem,
short answer: currently not, but it is technically feasible.
Long answer:
MOE requires access to a Mac in order to build your app. There is support for remote building over SSH, but then the next step is to install the application binaries on your iPhone or iPad. MOE uses the imobiledevice library for this. Currently we don’t have Linux versions built from this library, but it is certainly possible.
Best Regards,
Gergely